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Basic information

CohesinDB ID: CDBG00043136

Gene Symbol: URB1-AS1

Ensembl ID: ENSG00000256073

Gene locus: chr21:32393129-32393960 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3838 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.202
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,GM12878,Skin-Fibroblast,IMR-90,TAMR-MCF7,Kelly,H1-hESC,A-549,CC-2551,HAP1,HFFc6,KU-19-19,MCF7-FASR,HeLa-S3,H9-hESC,HUVEC

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE95015, 4DNFIATA1HD5, GSE94872, GSE118716, ENCSR499RVD, ENCSR852KQC, GSE126792, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFII6AN691, ENCSR981FNA, 4DNFICEGAHRC, ENCSR587DSF, GSE80820, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIBT4EAKN, 4DNFI3A3VYWU, Direct, 4DNFIBY3UHJB, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIK61ILGM, ENCSR404HWQ, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000256073