Deatailed information for gene ENSG00000259981

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  • Basic information
  • CohesinDB ID: CDBG00045537
  • Gene Symbol: AF096876.1
  • Ensembl ID: ENSG00000259981
  • Gene locus: chr21:30089716-30097836 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1262 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: K-562,MCF-10A,H1-hESC,HeLa-S3,H9-hESC,H1-Mesenchymal
  • Related loop: chr21:29950000-29975000~~chr21:30100000-30125000, chr21:30075000-30100000~~chr21:30175000-30200000, chr21:30075000-30100000~~chr21:30250000-30275000, chr21:30075000-30100000~~chr21:30925000-30950000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: GSE52457, 4DNFIM2BMJ33, Direct, 4DNFIDJ2JZ7Q, 4DNFIDKJFK2S, GSE105028, 4DNFIBN9K4V9, GSE101921, 4DNFIV239W4L
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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