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Basic information

CohesinDB ID: CDBG00045972

Gene Symbol: AP000223.1

Ensembl ID: ENSG00000260583

Gene locus: chr21:25582769-25583326 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1136 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.489
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,Liver,GM12878,IMR-90,K-562,Olfactory,H1-hESC,HFF-hTERT,HAP1,NaiveB,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm,HUES64

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIWZEN3FF, GSE43070, 4DNFIE8E4ANZ, GSE108787, GSE84022, 4DNFIW8TIFI5, 4DNFI7H4II2V, 4DNFIBM714BP, 4DNFIRKGMZRQ, ENCSR981FNA, 4DNFIV239W4L, GSE97394, GSE52457, 4DNFI3A3VYWU, 4DNFI6XD6JAQ, Direct, 4DNFISPUVQHA, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, GSE48592, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, GSE58752

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000260583