Deatailed information for gene ENSG00000261610
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00046711
- Gene Symbol: AP000265.1
- Ensembl ID: ENSG00000261610
-
Gene locus: chr21:32259803-32261585
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1423
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.541
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,Naive-hESC,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31150000-31175000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31622590-31624578~~chr21:32257174-32259289,
chr21:31622890-31624815~~chr21:32257354-32259325,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31780113-31781908~~chr21:32257425-32259313,
chr21:31780114-31782449~~chr21:32257201-32259301,
chr21:31780119-31781903~~chr21:32257467-32259276,
chr21:31780122-31781850~~chr21:32257426-32259309,
chr21:31780127-31781738~~chr21:32257453-32259309,
chr21:31780134-31782078~~chr21:32256511-32259378,
chr21:31780142-31781787~~chr21:32257174-32259289,
chr21:31780142-31781815~~chr21:32257381-32259299,
chr21:31780158-31781873~~chr21:32256411-32259438,
chr21:31780165-31781913~~chr21:32257185-32259313,
chr21:31780170-31781740~~chr21:32257456-32259286,
chr21:31780176-31781715~~chr21:32257195-32260019,
chr21:31780231-31781818~~chr21:32257685-32259278,
chr21:31780232-31781825~~chr21:32257190-32259329,
chr21:31780359-31781760~~chr21:32257354-32259325,
chr21:31780368-31781705~~chr21:32257665-32259284,
chr21:31780374-31781732~~chr21:32257419-32259297,
chr21:31780426-31781750~~chr21:32257414-32259287,
chr21:31780470-31781721~~chr21:32257487-32259412,
chr21:31780493-31781691~~chr21:32257422-32259254,
chr21:31784874-31786970~~chr21:32256543-32259299,
chr21:31784900-31787437~~chr21:32256367-32259995,
chr21:31784954-31787383~~chr21:32256342-32259326,
chr21:31784991-31787044~~chr21:32257192-32259306,
chr21:31784993-31787270~~chr21:32256274-32259275,
chr21:31784999-31787233~~chr21:32256341-32259331,
chr21:31785031-31787247~~chr21:32256511-32259378,
chr21:31785034-31787230~~chr21:32256411-32259438,
chr21:31785041-31787093~~chr21:32257381-32259299,
chr21:31785050-31787026~~chr21:32257438-32259314,
chr21:31785106-31787360~~chr21:32256462-32259302,
chr21:31785152-31787114~~chr21:32257190-32259329,
chr21:31785185-31787232~~chr21:32257399-32259289,
chr21:31785196-31787413~~chr21:32257174-32259289,
chr21:31785206-31787299~~chr21:32257185-32259313,
chr21:31785212-31787770~~chr21:32257426-32259309,
chr21:31785215-31787339~~chr21:32257425-32259313,
chr21:31785218-31787331~~chr21:32256496-32259419,
chr21:31785220-31787287~~chr21:32257395-32259361,
chr21:31785240-31787470~~chr21:32257315-32259388,
chr21:31785244-31787333~~chr21:32257487-32259412,
chr21:31785247-31787088~~chr21:32257448-32259319,
chr21:31785255-31787043~~chr21:32257456-32259286,
chr21:31785255-31787126~~chr21:32256545-32259247,
chr21:31785270-31788289~~chr21:32257201-32259301,
chr21:31785274-31787238~~chr21:32257419-32259292,
chr21:31785286-31787343~~chr21:32257414-32259264,
chr21:31785300-31786985~~chr21:32257739-32259287,
chr21:31785309-31786753~~chr21:32257402-32259244,
chr21:31785324-31787086~~chr21:32256476-32259292,
chr21:31785340-31787022~~chr21:32257685-32259278,
chr21:31785342-31786777~~chr21:32257453-32259309,
chr21:31785386-31787148~~chr21:32257354-32259325,
chr21:31785419-31786802~~chr21:32257417-32259304,
chr21:31785437-31786931~~chr21:32257431-32259307,
chr21:31785448-31786701~~chr21:32257665-32259284,
chr21:31825000-31850000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31865157-31867306~~chr21:32257685-32259278,
chr21:31865168-31867682~~chr21:32256342-32259326,
chr21:31865180-31867368~~chr21:32257185-32259313,
chr21:31865190-31867889~~chr21:32256367-32259995,
chr21:31865192-31867355~~chr21:32257195-32259363,
chr21:31865195-31867134~~chr21:32257381-32259299,
chr21:31865197-31867074~~chr21:32256511-32259378,
chr21:31865202-31867213~~chr21:32257174-32259289,
chr21:31865202-31867229~~chr21:32257395-32259361,
chr21:31865206-31867094~~chr21:32256476-32259292,
chr21:31865207-31867006~~chr21:32256496-32259419,
chr21:31865209-31867146~~chr21:32257476-32259450,
chr21:31865210-31867077~~chr21:32257453-32259309,
chr21:31865211-31867117~~chr21:32257438-32259314,
chr21:31865214-31867338~~chr21:32257201-32259301,
chr21:31865217-31867110~~chr21:32257228-32259294,
chr21:31865220-31867254~~chr21:32256411-32259438,
chr21:31865221-31867042~~chr21:32257414-32259264,
chr21:31865221-31867070~~chr21:32257315-32259388,
chr21:31865222-31867020~~chr21:32257456-32259286,
chr21:31865228-31867355~~chr21:32257190-32259329,
chr21:31865230-31867361~~chr21:32256274-32259275,
chr21:31865232-31867115~~chr21:32257195-32260019,
chr21:31865233-31867108~~chr21:32257487-32259412,
chr21:31865235-31867832~~chr21:32257485-32259289,
chr21:31865244-31867006~~chr21:32257426-32259309,
chr21:31865247-31867652~~chr21:32257419-32259292,
chr21:31865248-31867144~~chr21:32256462-32259302,
chr21:31865252-31867066~~chr21:32257486-32259262,
chr21:31865272-31867342~~chr21:32256341-32259331,
chr21:31865293-31867052~~chr21:32257402-32259244,
chr21:31865357-31867257~~chr21:32257638-32259280,
chr21:31865428-31867009~~chr21:32257414-32259287,
chr21:31865442-31866981~~chr21:32257354-32259325,
chr21:31865450-31867127~~chr21:32257447-32259293,
chr21:31865459-31867029~~chr21:32257757-32259222,
chr21:31865464-31867091~~chr21:32256545-32259247,
chr21:31865464-31867092~~chr21:32257192-32259306,
chr21:31865470-31866930~~chr21:32257417-32259304,
chr21:31865481-31867115~~chr21:32257677-32259293,
chr21:31865496-31866966~~chr21:32257419-32259297,
chr21:31865505-31867043~~chr21:32256543-32259299,
chr21:31865515-31867075~~chr21:32257445-32259345,
chr21:31865537-31866893~~chr21:32257665-32259284,
chr21:31865585-31866840~~chr21:32257379-32259282,
chr21:31865594-31866849~~chr21:32257485-32259262,
chr21:31871809-31875540~~chr21:32256411-32259438,
chr21:31872039-31874494~~chr21:32256511-32259378,
chr21:31872042-31874581~~chr21:32256342-32259326,
chr21:31872118-31875754~~chr21:32256367-32259995,
chr21:31872126-31874557~~chr21:32257195-32259363,
chr21:31872415-31873934~~chr21:32257185-32259313,
chr21:31872509-31873790~~chr21:32257190-32259329,
chr21:31872517-31873744~~chr21:32257476-32259450,
chr21:31875000-31900000~~chr21:32250000-32275000,
chr21:31933177-31934710~~chr21:32257228-32259294,
chr21:31933279-31934543~~chr21:32256462-32259302,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:31991338-31992891~~chr21:32257485-32259289,
chr21:31991347-31993191~~chr21:32257436-32259286,
chr21:31991417-31992782~~chr21:32257395-32259361,
chr21:31991454-31992738~~chr21:32257485-32259262,
chr21:31991470-31992926~~chr21:32257476-32259450,
chr21:31991525-31992800~~chr21:32256274-32259275,
chr21:32000000-32025000~~chr21:32250000-32275000,
chr21:32050000-32075000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32095899-32097665~~chr21:32256342-32259326,
chr21:32095914-32097481~~chr21:32256462-32259302,
chr21:32095923-32097744~~chr21:32257185-32259313,
chr21:32095946-32097766~~chr21:32256274-32259275,
chr21:32095947-32097429~~chr21:32257192-32259306,
chr21:32095949-32097315~~chr21:32257417-32259304,
chr21:32095949-32097664~~chr21:32256341-32259331,
chr21:32095950-32097502~~chr21:32257195-32259363,
chr21:32095978-32097865~~chr21:32256367-32259995,
chr21:32095998-32097302~~chr21:32257467-32259276,
chr21:32096061-32097312~~chr21:32257419-32259297,
chr21:32100000-32125000~~chr21:32250000-32275000,
chr21:32125000-32150000~~chr21:32250000-32275000,
chr21:32134808-32137469~~chr21:32257190-32259329,
chr21:32135152-32137406~~chr21:32257185-32259313,
chr21:32250000-32275000~~chr21:32550000-32575000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE115252, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFIK61ILGM, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, 4DNFIOX3BGNE, ENCSR478BMT, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .