Deatailed information for gene ENSG00000263681
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00047388
- Gene Symbol: MIR3197
- Ensembl ID: ENSG00000263681
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Gene locus: chr21:41167556-41167629
Strand: +
- Gene type: miRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0123
FDR = 0.1162
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: RT-112,K-562,Left-Ventricle,HT-1376,A-549,HFFc6,HeLa-S3,H9-hESC
- Related loop:
chr21:41121260-41122868~~chr21:41167149-41169803,
chr21:41150000-41175000~~chr21:41350000-41375000,
chr21:41150000-41175000~~chr21:41425000-41450000,
chr21:41150000-41175000~~chr21:41450000-41475000,
chr21:41150000-41175000~~chr21:41775000-41800000,
chr21:41167149-41169803~~chr21:41235512-41237477,
chr21:41167199-41169386~~chr21:41250553-41252905,
chr21:41169934-41171396~~chr21:41373764-41374984,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR338WUS, 4DNFII6AN691, Direct, 4DNFIMROE6N4, ENCSR933UZH, GSE105028, 4DNFI5SUHCGZ, GSE155380, GSE58752, GSE120294, ENCSR244BBG, 4DNFII84FBKM, 4DNFI7H4II2V
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .