Deatailed information for gene ENSG00000263969
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00047524
- Gene Symbol: RN7SL678P
- Ensembl ID: ENSG00000263969
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Gene locus: chr21:37215604-37215903
Strand: +
- Gene type: misc_RNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1276
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: NCI-H1437,H9-endodermal,GM12878,Skin-Fibroblast,HT-1197,H1-hESC,A-549,HFF-hTERT,HAP1,MCF7-FASR,PAEC,SU-DHL-2,H9-hESC,HUES64,SU-DHL-4
- Related loop:
chr21:34350000-34375000~~chr21:37200000-37225000,
chr21:36975000-37000000~~chr21:37200000-37225000,
chr21:37200000-37225000~~chr21:37425000-37450000,
chr21:37200000-37225000~~chr21:37475000-37500000,
chr21:37200000-37225000~~chr21:37525000-37550000,
chr21:37200000-37225000~~chr21:37550000-37575000,
chr21:37200000-37225000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37650000-37675000,
chr21:37219712-37222158~~chr21:37563130-37566817,
chr21:37219743-37222181~~chr21:37461893-37464011,
chr21:37219743-37222181~~chr21:37581749-37583648,
chr21:37219743-37222181~~chr21:37608243-37609947,
chr21:37219743-37222181~~chr21:37641599-37643616,
chr21:37219750-37222176~~chr21:37364949-37367653,
chr21:37219750-37222176~~chr21:37580199-37581548,
chr21:37219773-37222194~~chr21:37581619-37583704,
chr21:37219804-37222187~~chr21:37581794-37583687,
chr21:37219804-37222187~~chr21:37641615-37643952,
chr21:37219959-37222123~~chr21:37641546-37643999,
chr21:37219960-37222181~~chr21:37641580-37643713,
chr21:37220147-37222181~~chr21:37562857-37565652,
chr21:37220161-37222184~~chr21:37563560-37566497,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR662QKG, ENCSR478BMT, ENCSR732QOH, ENCSR658RQQ, GSE95015, 4DNFI2J1ODWB, Direct, GSE118716, ENCSR668RDP, 4DNFISPUVQHA, ENCSR833CMG, ENCSR386KHY, 4DNFI1UEG1HD, ENCSR499RVD, GSE105028, 4DNFIYIAUEPW, GSE97394, ENCSR587DSF
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .