Deatailed information for gene ENSG00000264002

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  • Basic information
  • CohesinDB ID: CDBG00047542
  • Gene Symbol: RN7SL52P
  • Ensembl ID: ENSG00000264002
  • Gene locus: chr21:9902343-9902627 Strand: -
  • Gene type: misc_RNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0087 FDR = 0.2692
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,CyT49-endoderm,HCT-116,H1-hESC,CyT49-Gut,HFF-hTERT,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,CyT49-hESC
  • Related loop: chr21:5225000-5250000~~chr21:9875000-9900000, chr21:7325000-7350000~~chr21:9875000-9900000, chr21:7950000-7975000~~chr21:9875000-9900000, chr21:9650000-9675000~~chr21:9875000-9900000, chr21:9725000-9750000~~chr21:9875000-9900000, chr21:9725000-9750000~~chr21:9900000-9925000, chr21:9775000-9800000~~chr21:9875000-9900000, chr21:9875000-9900000~~chr21:10325000-10350000, chr21:9875000-9900000~~chr21:10350000-10375000, chr21:9875000-9900000~~chr21:10800000-10825000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFIWZEN3FF, 4DNFIMROE6N4, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIKYXMF1E, ENCSR123UVP, 4DNFIXWCLD4M, Direct, 4DNFIV56OFE3, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIZF1KI43, 4DNFI9815EEJ, 4DNFIFI6NIKJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFII84FBKM
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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