Deatailed information for gene ENSG00000264462

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  • Basic information
  • CohesinDB ID: CDBG00047762
  • Gene Symbol: MIR3648-2
  • Ensembl ID: ENSG00000264462
  • Gene locus: chr21:8986998-8987178 Strand: +
  • Gene type: miRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0028 FDR = 0.7343
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HCT-116,GM12878,HAP1,H9-hESC,H1-Mesendoderm
  • Related loop: chr21:7950000-7975000~~chr21:8975000-9000000, chr21:8975000-9000000~~chr21:10250000-10275000, chr21:8975000-9000000~~chr21:10400000-10425000, chr21:8975000-9000000~~chr21:10450000-10475000, chr21:8975000-9000000~~chr21:10750000-10775000, chr21:8975000-9000000~~chr21:9750000-9775000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: GSE52457, 4DNFIEYQ5ZIR, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIJ8JKKWJ, 4DNFILIM6FDL, 4DNFIK61ILGM, ENCSR410MDC
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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