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Basic information

CohesinDB ID: CDBG00050322

Gene Symbol: AP001172.1

Ensembl ID: ENSG00000270071

Gene locus: chr21:16291078-16310382 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1755 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.672
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-10A,Psoas,MB157,Keratinocytes192627,H1-Mesenchymal,MCF-7,HEK293T,HeLa-S3,H1-Trophectoderm,H9-hESC,Hippocampus,Liver,H1-hESC,Motor-Neuron,NaiveB,BMEC,HUVEC,RT-112,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, GSE87112, GSE95015, 4DNFIWZEN3FF, GSE43070, GSE94872, 4DNFIE8E4ANZ, GSE108787, ENCSR794RDS, GSE116869, GSE84022, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIYD8LO9Z, GSE155380, 4DNFIL9M97T2, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFI6JJQKFJ, GSE101921, GSE44267, 4DNFIQVMVRP6, 4DNFIFI6NIKJ, ENCSR094EIC, GSE105028, GSE58752, ENCSR507AHE

Cohesin-loop subunit: Other,SMC1

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000270071