Deatailed information for gene ENSG00000270116

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  • Basic information
  • CohesinDB ID: CDBG00050350
  • Gene Symbol: AP001429.1
  • Ensembl ID: ENSG00000270116
  • Gene locus: chr21:37100813-37101343 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3451 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.462
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,HEK293T,REC-1,RT-112,Hep-G2,IMR-90,K-562,MB157,H1-hESC,A-549,HFF-hTERT,HAP1,Motor-Neuron,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
  • Related loop: chr21:36400000-36425000~~chr21:37075000-37100000, chr21:36950000-36975000~~chr21:37075000-37100000, chr21:36975000-37000000~~chr21:37075000-37100000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE116875, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, GSE116869, GSE120294, ENCSR852KQC, 4DNFIW8TIFI5, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIYD8LO9Z, GSE155380, 4DNFIV239W4L, GSE52457, Direct, 4DNFI6XD6JAQ, 4DNFI8Y9SRP2, GSE108869, ENCSR244BBG, GSE44267, 4DNFIQVMVRP6, 4DNFIDKJFK2S, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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