Deatailed information for gene ENSG00000272015
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00051480
- Gene Symbol: SNORA62
- Ensembl ID: ENSG00000272015
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Gene locus: chr21:38894784-38894867
Strand: +
- Gene type: snoRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0657
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,Liver,IMR-90,K-562,H1-hESC,HeLa-S3,H1-Trophectoderm,H9-hESC,BMEC,H1-Mesendoderm,SU-DHL-4
- Related loop:
chr21:38475000-38500000~~chr21:38875000-38900000,
chr21:38525000-38550000~~chr21:38875000-38900000,
chr21:38725000-38750000~~chr21:38875000-38900000,
chr21:38860970-38863732~~chr21:38897047-38898311,
chr21:38875000-38900000~~chr21:39025000-39050000,
chr21:38875000-38900000~~chr21:39050000-39075000,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38875000-38900000~~chr21:39150000-39175000,
chr21:38897047-38898311~~chr21:39016372-39018255,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE44267, GSE52457, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR507AHE, ENCSR658RQQ, 4DNFIVJ3IIQL, 4DNFI6XD6JAQ, Direct, 4DNFIDKJFK2S, GSE105028, GSE108787, 4DNFIDBIEXI7, 4DNFIZF1KI43, GSE58752, 4DNFIH7TH4MF, 4DNFIV239W4L, 4DNFI7H4II2V
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .