Deatailed information for gene ENSG00000272825
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00051922
- Gene Symbol: AL844908.1
- Ensembl ID: ENSG00000272825
-
Gene locus: chr21:44936302-44936954
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0704
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.610
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Right-Ventricle,Aorta,GM12892,K1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,NCI-H1437,Liver,OCI-AML-3,HCT-116,Germinal-Center-B,Hep-G2,HT-1197,H1-hESC,Motor-Neuron,GM19238,MSLCL,NaiveB,GM19240,BMEC,SU-DHL-4,HUVEC,HL-60,RT-112,Skin-Fibroblast,Left-Ventricle,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:43350000-43375000~~chr21:44925000-44950000,
chr21:44325000-44350000~~chr21:44925000-44950000,
chr21:44475000-44500000~~chr21:44925000-44950000,
chr21:44500000-44525000~~chr21:44925000-44950000,
chr21:44509121-44511913~~chr21:44931981-44933531,
chr21:44509213-44512100~~chr21:44930976-44933923,
chr21:44509488-44511948~~chr21:44931870-44933936,
chr21:44509542-44511909~~chr21:44939138-44940511,
chr21:44509755-44512096~~chr21:44931884-44933752,
chr21:44509876-44511623~~chr21:44931107-44933966,
chr21:44700000-44725000~~chr21:44925000-44950000,
chr21:44775000-44800000~~chr21:44925000-44950000,
chr21:44799372-44802443~~chr21:44931965-44934113,
chr21:44799392-44802491~~chr21:44931992-44933524,
chr21:44799411-44802024~~chr21:44931881-44933864,
chr21:44799443-44802060~~chr21:44931925-44933520,
chr21:44799602-44802376~~chr21:44931909-44933980,
chr21:44799686-44802514~~chr21:44931456-44933916,
chr21:44799696-44802591~~chr21:44931870-44933936,
chr21:44799706-44802994~~chr21:44930823-44933918,
chr21:44800000-44825000~~chr21:44925000-44950000,
chr21:44800017-44802385~~chr21:44930976-44933923,
chr21:44800498-44802680~~chr21:44931107-44933966,
chr21:44800563-44802483~~chr21:44931469-44933956,
chr21:44800595-44801781~~chr21:44931962-44933491,
chr21:44845331-44847295~~chr21:44932164-44933556,
chr21:44891768-44894263~~chr21:44930785-44933706,
chr21:44891773-44894141~~chr21:44931965-44934113,
chr21:44891803-44894255~~chr21:44930976-44933923,
chr21:44892147-44893707~~chr21:44931469-44933956,
chr21:44892183-44893746~~chr21:44930823-44933918,
chr21:44892195-44893675~~chr21:44931107-44933966,
chr21:44892203-44893706~~chr21:44930883-44933881,
chr21:44892207-44893651~~chr21:44931448-44933890,
chr21:44892212-44893701~~chr21:44931746-44933965,
chr21:44892220-44893680~~chr21:44931733-44933993,
chr21:44892220-44893951~~chr21:44931456-44933916,
chr21:44892229-44894264~~chr21:44931870-44933936,
chr21:44892231-44894090~~chr21:44931809-44933956,
chr21:44892235-44894046~~chr21:44931900-44933734,
chr21:44892235-44894095~~chr21:44931820-44933527,
chr21:44892241-44893918~~chr21:44932118-44933457,
chr21:44892249-44894678~~chr21:44931725-44934224,
chr21:44892293-44893660~~chr21:44932028-44933568,
chr21:44911054-44912570~~chr21:44931107-44933966,
chr21:44925000-44950000~~chr21:45125000-45150000,
chr21:44925000-44950000~~chr21:45250000-45275000,
chr21:44925000-44950000~~chr21:45275000-45300000,
chr21:44925000-44950000~~chr21:45425000-45450000,
chr21:44925000-44950000~~chr21:45450000-45475000,
chr21:44925000-44950000~~chr21:45800000-45825000,
chr21:44925000-44950000~~chr21:45850000-45875000,
chr21:5100000-5125000~~chr21:44925000-44950000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, GSE43070, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, GSE99541, ENCSR668RDP, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, GSE112000, 4DNFIAWVDQ8C, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, GSE155380, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9ZWZ5BS, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, ENCSR550JLK, 4DNFI3A3VYWU, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, GSE48592, 4DNFIDKJFK2S, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFI6EIFUZI, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR128RPG, ENCSR312TUD, 4DNFI1UEG1HD, GSE101921, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR338WUS, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .