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Basic information

CohesinDB ID: CDBG00051995

Gene Symbol: AP001412.1

Ensembl ID: ENSG00000272948

Gene locus: chr21:37267783-37268497 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2911 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.337
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,DU145,Right-Ventricle,Aorta,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,ARPE-19,Germinal-Center-B,Hep-G2,H1-hESC,HT-1376,NaiveB,BMEC,RT-112,Left-Ventricle,CC-2551,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR672RHL, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR668RDP, GSE155380, 4DNFIV239W4L, ENCSR587DSF, GSE80820, 4DNFI1E6NJQJ, 4DNFISTWNV9C, ENCSR507AHE, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFI1UEG1HD, GSE101921, GSE108869, ENCSR244BBG, ENCSR393LOP, GSE44267, ENCSR991JXX, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, GSE48592, ENCSR110JOO, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000272948