Deatailed information for gene ENSG00000273091
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052074
- Gene Symbol: AP000255.1
- Ensembl ID: ENSG00000273091
-
Gene locus: chr21:31735731-31736407
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.2727
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.404
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: GM12878,H1-hESC,HFF-hTERT,HAP1,HFFc6,HeLa-S3,H1-Mesenchymal,SU-DHL-4
- Related loop:
chr21:31250000-31275000~~chr21:31725000-31750000,
chr21:31725000-31750000~~chr21:31850000-31875000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:36975000-37000000,
chr21:31730164-31731503~~chr21:31771972-31774192,
chr21:31731849-31734483~~chr21:31771972-31774192,
chr21:31732064-31733263~~chr21:31771956-31774066,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, GSE52457, GSE95015, 4DNFIBM714BP, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIMROE6N4, 4DNFIFLJLIS5, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, ENCSR981FNA, 4DNFIW8TIFI5, ENCSR410MDC
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .