Deatailed information for gene ENSG00000273102
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052079
- Gene Symbol: AP000569.1
- Ensembl ID: ENSG00000273102
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Gene locus: chr21:33967100-33968573
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0338
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.897
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,IMR-90,K-562,TAMR-MCF7,H1-hESC,Motor-Neuron,HFF-hTERT,HFFc6,MCF7-FASR,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal
- Related loop:
chr21:33950000-33975000~~chr21:34050000-34075000,
chr21:33950000-33975000~~chr21:34200000-34225000,
chr21:33950000-33975000~~chr21:34325000-34350000,
chr21:33950000-33975000~~chr21:34350000-34375000,
chr21:33950000-33975000~~chr21:34500000-34525000,
chr21:33950000-33975000~~chr21:34525000-34550000,
chr21:33950000-33975000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:33950000-33975000~~chr21:34800000-34825000,
chr21:33967731-33970173~~chr21:34092084-34093399,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, GSE43070, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR350NJV, 4DNFIBM714BP, ENCSR668RDP, 4DNFIE8T8JZ8, GSE52457, 4DNFIM2BMJ33, 4DNFI6XD6JAQ, Direct, 4DNFISPUVQHA, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFINEQY95T, 4DNFIDBIEXI7, 4DNFII84FBKM
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .