Deatailed information for gene ENSG00000273115

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  • Basic information
  • CohesinDB ID: CDBG00052088
  • Gene Symbol: AP001596.2
  • Ensembl ID: ENSG00000273115
  • Gene locus: chr21:26459902-26460214 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1496 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.866
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HFF-hTERT,H1-hESC
  • Related loop: chr21:25750000-25775000~~chr21:26450000-26475000, chr21:25825000-25850000~~chr21:26450000-26475000, chr21:25850000-25875000~~chr21:26450000-26475000, chr21:26225000-26250000~~chr21:26450000-26475000, chr21:26450000-26475000~~chr21:26625000-26650000,
  • Cohesin-loop type: HiC
  • Cohesin-loop study: 4DNFIE8T8JZ8, 4DNFISPUVQHA
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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