Deatailed information for gene ENSG00000273199

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  • Basic information
  • CohesinDB ID: CDBG00052135
  • Gene Symbol: AP000692.2
  • Ensembl ID: ENSG00000273199
  • Gene locus: chr21:36319791-36320670 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1702 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.280
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Keratinocytes192627,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,REC-1,OCI-AML-3,HCT-116,Hep-G2,H1-hESC,Motor-Neuron,HUES64,SU-DHL-4,HUVEC,RT-112,CyT49-endoderm,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
  • Related loop: chr21:34350000-34375000~~chr21:36300000-36325000, chr21:34350000-34375000~~chr21:36325000-36350000, chr21:35025000-35050000~~chr21:36300000-36325000, chr21:36125000-36150000~~chr21:36300000-36325000, chr21:36125000-36150000~~chr21:36325000-36350000, chr21:36150000-36175000~~chr21:36300000-36325000, chr21:36150000-36175000~~chr21:36325000-36350000, chr21:36200000-36225000~~chr21:36325000-36350000, chr21:36225000-36250000~~chr21:36325000-36350000, chr21:36253261-36254421~~chr21:36319310-36321320, chr21:36259462-36261497~~chr21:36319312-36322600, chr21:36300000-36325000~~chr21:39175000-39200000,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE95015, 4DNFITUOMFUQ, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIRKGMZRQ, GSE99541, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, GSE80820, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, GSE120294, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIF2D3TL9, 4DNFIFHU75I5, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIX4PJKXZ, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, GSE116869, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, GSE111537, 4DNFIOUSETUP, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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