Deatailed information for gene ENSG00000273210
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052139
- Gene Symbol: AP001437.1
- Ensembl ID: ENSG00000273210
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Gene locus: chr21:37365476-37365932
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3577
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.265
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,DU145,Right-Ventricle,Aorta,K1,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,ARPE-19,Germinal-Center-B,Hep-G2,H1-hESC,HT-1376,NaiveB,BMEC,RT-112,Left-Ventricle,CC-2551,HFF-hTERT,HAP1
- Related loop:
chr21:36950000-36975000~~chr21:37350000-37375000,
chr21:36975000-37000000~~chr21:37350000-37375000,
chr21:37150000-37175000~~chr21:37350000-37375000,
chr21:37219750-37222176~~chr21:37364949-37367653,
chr21:37250000-37275000~~chr21:37350000-37375000,
chr21:37256973-37259370~~chr21:37367958-37369182,
chr21:37265872-37268915~~chr21:37364916-37367657,
chr21:37266235-37268923~~chr21:37364949-37367653,
chr21:37266285-37268905~~chr21:37364989-37367643,
chr21:37266529-37268622~~chr21:37364975-37369290,
chr21:37267024-37268624~~chr21:37364965-37367685,
chr21:37267054-37268569~~chr21:37365010-37367672,
chr21:37267089-37268595~~chr21:37365079-37366546,
chr21:37350000-37375000~~chr21:37450000-37475000,
chr21:37350000-37375000~~chr21:37625000-37650000,
chr21:37350000-37375000~~chr21:37650000-37675000,
chr21:37350000-37375000~~chr21:37900000-37925000,
chr21:37350000-37375000~~chr21:38275000-38300000,
chr21:37368049-37369282~~chr21:37563670-37565316,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, GSE84022, GSE120294, ENCSR672RHL, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIMEG1QIC, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR668RDP, GSE155380, 4DNFIV239W4L, ENCSR587DSF, GSE80820, 4DNFISTWNV9C, GSE52457, 4DNFIM2BMJ33, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, 4DNFIX7H3CE2, GSE101921, ENCSR244BBG, ENCSR393LOP, GSE44267, ENCSR991JXX, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, GSE48592, ENCSR110JOO, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE105028, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE58752, ENCSR507AHE, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .