Deatailed information for gene ENSG00000273254
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052166
- Gene Symbol: AF129075.2
- Ensembl ID: ENSG00000273254
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Gene locus: chr21:29024254-29024890
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.2268
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.347
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: ARPE-19,GM12878,Hep-G2,IMR-90,K-562,H1-hESC,HT-1376,Jurkat,HAP1,HFFc6,PAEC,H9-hESC
- Related loop:
chr21:17775000-17800000~~chr21:29000000-29025000,
chr21:25325000-25350000~~chr21:29000000-29025000,
chr21:25725000-25750000~~chr21:29000000-29025000,
chr21:28991455-28993844~~chr21:29023842-29026326,
chr21:28991517-28993800~~chr21:29024190-29026094,
chr21:28991528-28993711~~chr21:29024204-29026148,
chr21:28991579-28993764~~chr21:29023633-29025850,
chr21:28991614-28993817~~chr21:29023881-29026318,
chr21:28991626-28993358~~chr21:29018475-29019750,
chr21:28991807-28993775~~chr21:29023855-29025783,
chr21:29002049-29004026~~chr21:29018446-29019818,
chr21:29025000-29050000~~chr21:31675000-31700000,
chr21:29025000-29050000~~chr21:32325000-32350000,
chr21:29025000-29050000~~chr21:32750000-32775000,
chr21:29025000-29050000~~chr21:33525000-33550000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR194SRI, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR852KQC, ENCSR361AYD, ENCSR146FPM, ENCSR410MDC, ENCSR668RDP, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI3A3VYWU, Direct, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIPAF4PYT, ENCSR110JOO, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDZT7PR8
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .