Deatailed information for gene ENSG00000273464
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052280
- Gene Symbol: AP000238.1
- Ensembl ID: ENSG00000273464
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Gene locus: chr21:29657405-29657831
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1828
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.354
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-hESC,HFFc6,HeLa-S3,HL-60
- Related loop:
chr21:29075000-29100000~~chr21:29650000-29675000,
chr21:29500000-29525000~~chr21:29650000-29675000,
chr21:29650000-29675000~~chr21:29825000-29850000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
Direct, 4DNFIMROE6N4, GSE131580, GSE105028, 4DNFI5SUHCGZ, GSE120294, 4DNFII84FBKM, 4DNFICEGAHRC
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .