Deatailed information for gene ENSG00000273796

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  • Basic information
  • CohesinDB ID: CDBG00052445
  • Gene Symbol: BX322562.1
  • Ensembl ID: ENSG00000273796
  • Gene locus: chr21:45403808-45404369 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2556 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.520
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,H1-hESC,A-549,HFF-hTERT,MCF7-FASR
  • Related loop: chr21:43900000-43925000~~chr21:45400000-45425000, chr21:44075000-44100000~~chr21:45375000-45400000, chr21:45293942-45295657~~chr21:45403665-45407376, chr21:45300000-45325000~~chr21:45400000-45425000,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: ENCSR662QKG, 4DNFIA6NSSBJ, 4DNFIRZA6EV6, Direct, GSE118716, 4DNFIDSWKFF5, ENCSR587DSF, ENCSR410MDC
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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