Deatailed information for gene ENSG00000273872

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  • Basic information
  • CohesinDB ID: CDBG00052481
  • Gene Symbol: SLC25A15P4
  • Ensembl ID: ENSG00000273872
  • Gene locus: chr21:10612454-10613379 Strand: -
  • Gene type: unprocessed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1127 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,HCT-116,K-562,TAMR-MCF7,H1-hESC,HFF-hTERT,HFFc6,MCF7-FASR,H9-hESC,Olfactory
  • Related loop: chr21:10325000-10350000~~chr21:10600000-10625000, chr21:10400000-10425000~~chr21:10600000-10625000, chr21:10600000-10625000~~chr21:10775000-10800000, chr21:10600000-10625000~~chr21:10800000-10825000, chr21:5225000-5250000~~chr21:10600000-10625000, chr21:7325000-7350000~~chr21:10600000-10625000, chr21:8750000-8775000~~chr21:10600000-10625000, chr21:9775000-9800000~~chr21:10600000-10625000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIE8T8JZ8, 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIBM714BP, Direct, 4DNFITUOMFUQ, GSE118716, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, ENCSR123UVP
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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