Deatailed information for gene ENSG00000274248
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052663
- Gene Symbol: AJ011932.1
- Ensembl ID: ENSG00000274248
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Gene locus: chr21:45974488-45974953
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.4286
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.637
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,K1,H1-Mesendoderm,Hepatocyte-H9,MCF-7,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,iPSC,Liver,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,HUVEC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:45950000-45975000~~chr21:46050000-46075000,
chr21:45950000-45975000~~chr21:46075000-46100000,
chr21:45950000-45975000~~chr21:46100000-46125000,
chr21:45950000-45975000~~chr21:46125000-46150000,
chr21:45950000-45975000~~chr21:46200000-46225000,
chr21:45969912-45971939~~chr21:46146852-46148242,
chr21:45969927-45971657~~chr21:46143028-46144654,
chr21:45969938-45971632~~chr21:46097212-46099767,
chr21:45972574-45974684~~chr21:46096717-46099725,
chr21:45972821-45974610~~chr21:46143050-46144647,
chr21:45972840-45974615~~chr21:46096634-46099688,
chr21:45972865-45974723~~chr21:46097212-46099767,
chr21:45972883-45974607~~chr21:46096709-46099711,
chr21:45972910-45974653~~chr21:46097148-46100727,
chr21:45972910-45974653~~chr21:46143028-46144654,
chr21:45973206-45974743~~chr21:46096706-46098645,
chr21:45973208-45974665~~chr21:46096817-46098665,
chr21:45975000-46000000~~chr21:46075000-46100000,
chr21:45975000-46000000~~chr21:46100000-46125000,
chr21:45975000-46000000~~chr21:46125000-46150000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, 4DNFI6CWNUFL, GSE94872, 4DNFIMROE6N4, GSE118716, ENCSR499RVD, ENCSR794RDS, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIPV5KFMK, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIOX3BGNE, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR866FWQ, ENCSR732QOH, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIL5K3MA1, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIOUSETUP, 4DNFI1E6NJQJ, GSE52457, 4DNFIBT4EAKN, 4DNFIM2BMJ33, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIYDBBSE3, 4DNFI8Y9SRP2, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, 4DNFI8JFOAJT, ENCSR393LOP, 4DNFIC3HAU11, ENCSR305RTT, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDZT7PR8, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .