Deatailed information for gene ENSG00000274391
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052746
- Gene Symbol: TPTE
- Ensembl ID: ENSG00000274391
-
Gene locus: chr21:10521552-10606140
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-8757300-8758078,
chr21-8758420-8759556,
chr21-8759773-8759983,
chr21-8765020-8765366,
chr21-8766184-8767019,
chr21-8772696-8774029,
chr21-8774921-8776421,
chr21-8777197-8777587,
chr21-8778301-8779274,
chr21-8779830-8780154,
chr21-8782866-8783149,
chr21-8784821-8785458,
chr21-8786700-8788788,
chr21-8789052-8789340,
chr21-8789926-8790191,
chr21-8794412-8794748,
chr21-8795298-8795732,
chr21-8796154-8796759,
chr21-8797284-8797542,
chr21-8798266-8799646,
chr21-9002922-9003313,
chr21-9003714-9004222,
chr21-9005397-9005698,
chr21-9007541-9008147,
chr21-9008427-9009083,
chr21-9010125-9014826,
chr21-9015219-9019636,
chr21-9020701-9022614,
chr21-9022909-9023494,
chr21-9023820-9024732,
chr21-9749758-9752462,
chr21-9753460-9753714,
chr21-9753950-9754315,
chr21-9755361-9755785,
chr21-9757184-9757776,
chr21-9758865-9759713,
chr21-9766897-9768818,
chr21-9769085-9769561,
chr21-9770208-9770891,
chr21-9771503-9772045,
chr21-9774368-9774688,
chr21-9775000-9775469,
chr21-9775931-9776385,
chr21-9778518-9779017,
chr21-9780487-9780754,
chr21-9783541-9784264,
chr21-9785451-9785724,
chr21-9790335-9791861,
chr21-9798037-9798357,
chr21-9949543-9950678,
chr21-9951241-9951492,
chr21-9958283-9959898,
chr21-9962109-9962298,
chr21-9967567-9968674,
chr21-9969358-9969750,
chr21-9971886-9972997,
chr21-10324288-10326453,
chr21-10327683-10327975,
chr21-10329697-10329970,
chr21-10330588-10331255,
chr21-10332523-10332867,
chr21-10334816-10335443,
chr21-10336668-10337141,
chr21-10340050-10340588,
chr21-10341334-10344031,
chr21-10344300-10344680,
chr21-10345130-10345627,
chr21-10346310-10348506,
chr21-10375985-10377360,
chr21-10377614-10381787,
chr21-10382172-10383719,
chr21-10383972-10386571,
chr21-10388617-10389039,
chr21-10391002-10391296,
chr21-10392917-10393246,
chr21-10395476-10399647,
chr21-10399955-10406392,
chr21-10408012-10408338,
chr21-10409815-10410256,
chr21-10411410-10411808,
chr21-10412733-10417199,
chr21-10417488-10418105,
chr21-10418382-10419061,
chr21-10419739-10420762,
chr21-10422048-10424635,
chr21-10450028-10451050,
chr21-10451271-10451627,
chr21-10451885-10452844,
chr21-10453630-10454021,
chr21-10454669-10455031,
chr21-10456131-10456773,
chr21-10457679-10458127,
chr21-10458664-10459078,
chr21-10459283-10459479,
chr21-10459703-10460137,
chr21-10460351-10460888,
chr21-10461473-10461818,
chr21-10465427-10466183,
chr21-10468025-10468324,
chr21-10469060-10469839,
chr21-10472059-10472355,
chr21-10516946-10517254,
chr21-10517998-10518605,
chr21-10519082-10519565,
chr21-10520357-10522612,
chr21-10527123-10527184,
chr21-10528887-10529180,
chr21-10537307-10537720,
chr21-10539647-10539972,
chr21-10541128-10541536,
chr21-10542495-10542648,
chr21-10544379-10544719,
chr21-10547302-10549059,
chr21-10555128-10555514,
chr21-10559534-10559806,
chr21-10563873-10564541,
chr21-10566660-10567014,
chr21-10570865-10571217,
chr21-10574547-10575725,
chr21-10576221-10576433,
chr21-10579285-10579546,
chr21-10581781-10582259,
chr21-10584306-10584659,
chr21-10584972-10585529,
chr21-10587604-10590924,
chr21-10591774-10592096,
chr21-10596240-10596848,
chr21-10599867-10600437,
chr21-10601197-10601871,
chr21-10602588-10603061,
chr21-10726939-10727465,
chr21-10728783-10729161,
chr21-10730047-10730250,
chr21-10731151-10731480,
chr21-10731774-10732201,
chr21-10734654-10735227,
chr21-10735654-10735949,
chr21-10736991-10737360,
chr21-10739795-10740495,
chr21-10746406-10746833,
chr21-10747063-10747393,
chr21-10748191-10750740,
chr21-10751250-10754442,
chr21-10754864-10756335,
chr21-10756813-10757188,
chr21-10759412-10759937,
chr21-10761756-10762563,
chr21-10767818-10768102,
chr21-10768551-10769444,
chr21-10769753-10770796,
chr21-10778175-10778627,
chr21-10785688-10786143,
chr21-10786606-10786858,
chr21-10787061-10788063,
chr21-10789776-10790025,
chr21-10798042-10798699,
chr21-10802365-10802666,
chr21-10805280-10806833,
chr21-10808646-10808954,
chr21-10809280-10809935,
chr21-10810688-10811081,
chr21-10811436-10811999,
chr21-10813164-10814442,
-
Co-expression with cohesin genes Rho = 0.0571
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.953
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,HCT-116,Hep-G2,H1-hESC,Motor-Neuron,CyT49-hESC,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:10325000-10350000~~chr21:10525000-10550000,
chr21:10325000-10350000~~chr21:10550000-10575000,
chr21:10325000-10350000~~chr21:10575000-10600000,
chr21:10325000-10350000~~chr21:10600000-10625000,
chr21:10375000-10400000~~chr21:10525000-10550000,
chr21:10375000-10400000~~chr21:10550000-10575000,
chr21:10400000-10425000~~chr21:10525000-10550000,
chr21:10400000-10425000~~chr21:10575000-10600000,
chr21:10400000-10425000~~chr21:10600000-10625000,
chr21:10450000-10475000~~chr21:10550000-10575000,
chr21:10575000-10600000~~chr21:10725000-10750000,
chr21:10575000-10600000~~chr21:10750000-10775000,
chr21:10575000-10600000~~chr21:10775000-10800000,
chr21:10575000-10600000~~chr21:10800000-10825000,
chr21:10600000-10625000~~chr21:10775000-10800000,
chr21:10600000-10625000~~chr21:10800000-10825000,
chr21:5225000-5250000~~chr21:10525000-10550000,
chr21:5225000-5250000~~chr21:10550000-10575000,
chr21:5225000-5250000~~chr21:10575000-10600000,
chr21:5225000-5250000~~chr21:10600000-10625000,
chr21:7325000-7350000~~chr21:10575000-10600000,
chr21:7325000-7350000~~chr21:10600000-10625000,
chr21:7950000-7975000~~chr21:10550000-10575000,
chr21:8750000-8775000~~chr21:10575000-10600000,
chr21:8750000-8775000~~chr21:10600000-10625000,
chr21:8775000-8800000~~chr21:10575000-10600000,
chr21:9000000-9025000~~chr21:10575000-10600000,
chr21:9750000-9775000~~chr21:10575000-10600000,
chr21:9775000-9800000~~chr21:10575000-10600000,
chr21:9775000-9800000~~chr21:10600000-10625000,
chr21:9950000-9975000~~chr21:10575000-10600000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFI3CFMRID, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, ENCSR499RVD, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIYD8LO9Z, GSE155380, 4DNFICSTCJQZ, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIXWCLD4M, 4DNFIH7TH4MF, 4DNFISPUVQHA, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFIK61ILGM, 4DNFIEJEFCAM, ENCSR228TUX, 4DNFIZF1KI43, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIPAF4PYT, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFI1CIGHYC, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: K-562
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE131448
- Cohesin-DEGs, subunit: SA2