Deatailed information for gene ENSG00000274749
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00052927
- Gene Symbol: KRTAP7-1
- Ensembl ID: ENSG00000274749
-
Gene locus: chr21:30829038-30829759
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0409
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.969
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,TAMR-MCF7,GM12892,K1,H1-Mesendoderm,GM19239,GM12891,GM12878,MSiPS,K-562,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,iPSC,Kelly,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,GM19240,HUES64,SU-DHL-4,NPC-H9,CyT49-endoderm,RT-112,Jurkat,CyT49-Gut,HFF-hTERT
- Related loop:
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30450000-30475000~~chr21:30825000-30850000,
chr21:30500000-30525000~~chr21:30800000-30825000,
chr21:30675000-30700000~~chr21:30800000-30825000,
chr21:30800000-30825000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:30925000-30950000,
chr21:30825000-30850000~~chr21:31025000-31050000,
chr21:30825000-30850000~~chr21:31050000-31075000,
chr21:30825000-30850000~~chr21:31075000-31100000,
chr21:30825000-30850000~~chr21:31250000-31275000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30830459-30832429~~chr21:31085305-31087770,
chr21:30830463-30832644~~chr21:31085276-31087698,
chr21:30830556-30832338~~chr21:31085303-31087674,
chr21:30830558-30832217~~chr21:31085880-31087834,
chr21:30830586-30832133~~chr21:31085846-31087579,
chr21:30830591-30832139~~chr21:31085855-31087840,
chr21:30830596-30832211~~chr21:31085853-31087731,
chr21:30830621-30832317~~chr21:31085511-31087571,
chr21:30830627-30832163~~chr21:31085534-31087724,
chr21:30830642-30832041~~chr21:31085610-31087382,
chr21:30830642-30832041~~chr21:31603800-31605717,
chr21:30830642-30832312~~chr21:31085539-31087715,
chr21:30830656-30832111~~chr21:31085865-31087801,
chr21:30830656-30832237~~chr21:31085540-31087780,
chr21:30830659-30832102~~chr21:31085883-31087739,
chr21:30830671-30832343~~chr21:31085489-31087693,
chr21:30830671-30832343~~chr21:31603478-31605998,
chr21:30830675-30832099~~chr21:31085895-31087538,
chr21:30830675-30832195~~chr21:31064348-31065654,
chr21:30830675-30832195~~chr21:31085886-31087793,
chr21:30830678-30832179~~chr21:31085537-31087555,
chr21:30830681-30832084~~chr21:31085892-31087434,
chr21:30830698-30832369~~chr21:31085533-31087771,
chr21:30830704-30832054~~chr21:31085911-31087273,
chr21:30830706-30832273~~chr21:31085533-31087826,
chr21:30830708-30832383~~chr21:31085519-31087782,
chr21:30830758-30832312~~chr21:31085637-31087698,
chr21:30830762-30832234~~chr21:31085581-31087374,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE43070, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, 4DNFIB7QTIMH, 4DNFIBN9K4V9, GSE120294, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFIILDWK8M, 4DNFIOX3BGNE, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR478BMT, 4DNFIBM714BP, 4DNFIREVU1Z5, GSE155380, 4DNFIJWBWE41, ENCSR981FNA, 4DNFIV239W4L, GSE97394, ENCSR752QCX, ENCSR452NHL, 4DNFIE8T8JZ8, 4DNFIIMZB6Y9, ENCSR128RPG, 4DNFI9YAVTI1, 4DNFIBT4EAKN, 4DNFIJ5DQZVK, GSE52457, ENCSR658RQQ, ENCSR312TUD, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIYDBBSE3, 4DNFI1UEG1HD, GSE116872, ENCSR778FXH, ENCSR305RTT, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIQ2687RT, GSE105028, ENCSR033GUP, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .