Deatailed information for gene ENSG00000275464
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00053287
- Gene Symbol: FP565260.1
- Ensembl ID: ENSG00000275464
-
Gene locus: chr21:5130870-5154658
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
chr21-5120084-5126026,
chr21-5126436-5129485,
chr21-5129914-5131366,
chr21-5132765-5133509,
chr21-5135600-5136164,
chr21-5136489-5136867,
chr21-5137144-5137569,
chr21-5138667-5140110,
chr21-5140406-5143560,
chr21-5143851-5144251,
chr21-5144780-5145873,
chr21-5146999-5148379,
chr21-5153420-5155308,
chr21-5158203-5158553,
-
Co-expression with cohesin genes Rho = 0.4664
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.232
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.813
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,Hep-G2,H1-hESC,CyT49-hESC,CyT49-endoderm,KBM-7,CyT49-Gut,HAP1,MCF7-FASR
- Related loop:
chr21:5125000-5150000~~chr21:43300000-43325000,
chr21:5125000-5150000~~chr21:43800000-43825000,
chr21:5125000-5150000~~chr21:43825000-43850000,
chr21:5125000-5150000~~chr21:44025000-44050000,
chr21:5125000-5150000~~chr21:44050000-44075000,
chr21:5125000-5150000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44000000-44025000,
chr21:5150000-5175000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44100000-44125000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, 4DNFI5SUHCGZ, 4DNFIEYQ5ZIR, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI3A3VYWU, Direct, 4DNFIYDBBSE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIOCW5AEM, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: HPC,P3HR-1
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE140651,GSE119828
- Cohesin-DEGs, subunit: SMC1,CdLS