Deatailed information for gene ENSG00000275592
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00053348
- Gene Symbol: VN1R7P
- Ensembl ID: ENSG00000275592
-
Gene locus: chr21:10357399-10358620
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0357
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,Hep-G2,IMR-90,K-562,KBM-7,H1-hESC,CyT49-Gut,HFF-hTERT,HAP1,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,Olfactory,HUVEC,CyT49-hESC
- Related loop:
chr21:10250000-10275000~~chr21:10350000-10375000,
chr21:10350000-10375000~~chr21:10450000-10475000,
chr21:10350000-10375000~~chr21:10725000-10750000,
chr21:10350000-10375000~~chr21:10750000-10775000,
chr21:10350000-10375000~~chr21:10775000-10800000,
chr21:10350000-10375000~~chr21:10800000-10825000,
chr21:10350000-10375000~~chr21:13000000-13025000,
chr21:10350000-10375000~~chr21:13800000-13825000,
chr21:5200000-5225000~~chr21:10350000-10375000,
chr21:5225000-5250000~~chr21:10350000-10375000,
chr21:7250000-7275000~~chr21:10350000-10375000,
chr21:7950000-7975000~~chr21:10350000-10375000,
chr21:8675000-8700000~~chr21:10350000-10375000,
chr21:8750000-8775000~~chr21:10350000-10375000,
chr21:9650000-9675000~~chr21:10350000-10375000,
chr21:9750000-9775000~~chr21:10350000-10375000,
chr21:9875000-9900000~~chr21:10350000-10375000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFI5SUHCGZ, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFI9VXTBE2, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFI9YAVTI1, 4DNFI3A3VYWU, Direct, 4DNFI6XD6JAQ, 4DNFIXWCLD4M, 4DNFIH7TH4MF, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIYDBBSE3, 4DNFIEJEFCAM, 4DNFIZF1KI43, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIOCW5AEM, 4DNFI9ZWZ5BS, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFI1CIGHYC, 4DNFII84FBKM, 4DNFIT96Z365
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .