Deatailed information for gene ENSG00000275631
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00053362
- Gene Symbol: U1
- Ensembl ID: ENSG00000275631
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Gene locus: chr21:9646824-9647000
Strand: +
- Gene type: snRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0200
FDR = 0.0098
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HCT-116,GM12878,CyT49-endoderm,TAMR-MCF7,HFFc6,H9-hESC,CyT49-hESC
- Related loop:
chr21:5225000-5250000~~chr21:9650000-9675000,
chr21:7950000-7975000~~chr21:9625000-9650000,
chr21:7950000-7975000~~chr21:9650000-9675000,
chr21:9525000-9550000~~chr21:9650000-9675000,
chr21:9550000-9575000~~chr21:9650000-9675000,
chr21:9625000-9650000~~chr21:9725000-9750000,
chr21:9650000-9675000~~chr21:10325000-10350000,
chr21:9650000-9675000~~chr21:10350000-10375000,
chr21:9650000-9675000~~chr21:9750000-9775000,
chr21:9650000-9675000~~chr21:9875000-9900000,
- Cohesin-loop type: HiC
- Cohesin-loop study:
4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIMROE6N4, GSE118716, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIYDBBSE3, 4DNFI1UEG1HD, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .