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Basic information

CohesinDB ID: CDBG00053807

Gene Symbol: AF254982.1

Ensembl ID: ENSG00000276556

Gene locus: chr21:10640027-10640338 Strand: -

Gene type: unprocessed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0692 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,MCF-7,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,H1-hESC,CyT49-hESC,RT-112,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQYQWPF5, 4DNFIWZEN3FF, 4DNFITUOMFUQ, GSE118716, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIBXWIH8J, 4DNFIJWBWE41, GSE155380, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIV56OFE3, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000276556