Deatailed information for gene ENSG00000277282
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00054168
- Gene Symbol: IGHV1OR21-1
- Ensembl ID: ENSG00000277282
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Gene locus: chr21:10649399-10649835
Strand: -
- Gene type: IG_V_gene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0335
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.948
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,Olfactory,MCF-7,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,Hep-G2,H1-hESC,CyT49-hESC,RT-112,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:10000000-10025000~~chr21:10625000-10650000,
chr21:10325000-10350000~~chr21:10625000-10650000,
chr21:10400000-10425000~~chr21:10625000-10650000,
chr21:10625000-10650000~~chr21:10750000-10775000,
chr21:10625000-10650000~~chr21:10775000-10800000,
chr21:10625000-10650000~~chr21:10800000-10825000,
chr21:10650000-10675000~~chr21:10775000-10800000,
chr21:5225000-5250000~~chr21:10625000-10650000,
chr21:5350000-5375000~~chr21:10625000-10650000,
chr21:7250000-7275000~~chr21:10625000-10650000,
chr21:7300000-7325000~~chr21:10625000-10650000,
chr21:7325000-7350000~~chr21:10625000-10650000,
chr21:7925000-7950000~~chr21:10650000-10675000,
chr21:8750000-8775000~~chr21:10625000-10650000,
chr21:9225000-9250000~~chr21:10650000-10675000,
chr21:9750000-9775000~~chr21:10625000-10650000,
chr21:9775000-9800000~~chr21:10625000-10650000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFIWZEN3FF, 4DNFITUOMFUQ, GSE118716, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIV56OFE3, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .