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Basic information

CohesinDB ID: CDBG00054597

Gene Symbol: AF254983.2

Ensembl ID: ENSG00000278106

Gene locus: chr21:10397643-10397778 Strand: +

Gene type: unprocessed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0210 FDR = 0.0067
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.978
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,iPSC,SARS-Cov2-olfactory,GM12878,HCT-116,K-562,TAMR-MCF7,KBM-7,H1-hESC,A-549,CyT49-Gut,HAP1,HFF-hTERT,HFFc6,Keratinocytes192627,MCF7-FASR,H9-hESC

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQYQWPF5, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFII6AN691, 4DNFIJWBWE41, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFISPUVQHA, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFIQ2687RT, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000278106