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Basic information

CohesinDB ID: CDBG00054876

Gene Symbol: CYCSP41

Ensembl ID: ENSG00000278678

Gene locus: chr21:10576291-10576587 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1388 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,Olfactory,SARS-Cov2-olfactory,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,HCT-116,Hep-G2,Motor-Neuron,H1-hESC,CyT49-hESC,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI3CFMRID, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIYD8LO9Z, GSE155380, 4DNFICSTCJQZ, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIXWCLD4M, 4DNFI1CIGHYC, 4DNFIX7H3CE2, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFIYDBBSE3, 4DNFIK61ILGM, 4DNFIEJEFCAM, ENCSR228TUX, 4DNFIZF1KI43, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIPAF4PYT, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFIH7TH4MF, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000278678