Deatailed information for gene ENSG00000278932
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055030
- Gene Symbol: CR381653.1
- Ensembl ID: ENSG00000278932
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Gene locus: chr21:9325012-9368775
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.2787
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.225
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HL-60,HCT-116,RT-112,HAP1,PAEC,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:6350000-6375000~~chr21:9325000-9350000,
chr21:6350000-6375000~~chr21:9350000-9375000,
chr21:6375000-6400000~~chr21:9350000-9375000,
chr21:8775000-8800000~~chr21:9350000-9375000,
chr21:8850000-8875000~~chr21:9350000-9375000,
chr21:9100000-9125000~~chr21:9325000-9350000,
chr21:9100000-9125000~~chr21:9350000-9375000,
chr21:9115312-9116573~~chr21:9344147-9345296,
chr21:9125000-9150000~~chr21:9300000-9325000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE52457, GSE95015, Direct, ENCSR668RDP, GSE105028, 4DNFILIM6FDL, GSE131580, GSE155380
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .