Deatailed information for gene ENSG00000279156
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055219
- Gene Symbol: AL157359.3
- Ensembl ID: ENSG00000279156
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Gene locus: chr21:18917212-18917429
Strand: +
- Gene type: TEC
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0044
FDR = 0.5805
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: RT-112,H9-hESC,HAP1,H1-hESC
- Related loop:
chr21:18275000-18300000~~chr21:18900000-18925000,
chr21:18375000-18400000~~chr21:18900000-18925000,
chr21:18500000-18525000~~chr21:18900000-18925000,
chr21:18525000-18550000~~chr21:18900000-18925000,
chr21:18900000-18925000~~chr21:19600000-19625000,
chr21:18900000-18925000~~chr21:19675000-19700000,
chr21:18900000-18925000~~chr21:19725000-19750000,
chr21:18900000-18925000~~chr21:20950000-20975000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
Direct, 4DNFIDJ2JZ7Q, GSE105028, 4DNFI6JJQKFJ, GSE155380
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .