Deatailed information for gene ENSG00000279167

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  • Basic information
  • CohesinDB ID: CDBG00055229
  • Gene Symbol: CR381572.1
  • Ensembl ID: ENSG00000279167
  • Gene locus: chr21:8701460-8701562 Strand: +
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0106 FDR = 0.1775
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,IMR-90,KBM-7,H1-hESC,CyT49-pancreatic,HFFc6,H9-hESC,CyT49-hESC
  • Related loop: chr21:7925000-7950000~~chr21:8675000-8700000, chr21:7950000-7975000~~chr21:8675000-8700000, chr21:8675000-8700000~~chr21:10325000-10350000, chr21:8675000-8700000~~chr21:10350000-10375000, chr21:8675000-8700000~~chr21:10425000-10450000, chr21:8675000-8700000~~chr21:10450000-10475000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI9815EEJ, 4DNFIEYQ5ZIR, 4DNFII6AN691, Direct, 4DNFIKYXMF1E, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, 4DNFIYDBBSE3, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIIMZB6Y9
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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