Deatailed information for gene ENSG00000279213

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  • Basic information
  • CohesinDB ID: CDBG00055266
  • Gene Symbol: SNX18P10
  • Ensembl ID: ENSG00000279213
  • Gene locus: chr21:8801361-8801880 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0021 FDR = 0.7968
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HCT-116,CyT49-endoderm,RT-112,KBM-7,HAP1,H9-hESC,CyT49-hESC
  • Related loop: chr21:5225000-5250000~~chr21:8775000-8800000, chr21:8775000-8800000~~chr21:10325000-10350000, chr21:8775000-8800000~~chr21:10425000-10450000, chr21:8775000-8800000~~chr21:10575000-10600000, chr21:8775000-8800000~~chr21:9000000-9025000, chr21:8775000-8800000~~chr21:9100000-9125000, chr21:8775000-8800000~~chr21:9350000-9375000, chr21:8775000-8800000~~chr21:9750000-9775000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI1E6NJQJ, 4DNFIEYQ5ZIR, 4DNFII6AN691, Direct, 4DNFIJ8JKKWJ, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, 4DNFILIM6FDL, 4DNFIYDBBSE3, GSE155380, 4DNFIEJEFCAM, 4DNFIT96Z365
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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