Deatailed information for gene ENSG00000279365

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  • Basic information
  • CohesinDB ID: CDBG00055377
  • Gene Symbol: AP000695.3
  • Ensembl ID: ENSG00000279365
  • Gene locus: chr21:36485866-36487760 Strand: +
  • Gene type: TEC
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0750 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.771
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,HEK293T,Liver,GM12878,Skin-Fibroblast,K-562,MCF-10A,TAMR-MCF7,H1-hESC,A-549,HFF-hTERT,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
  • Related loop: chr21:36475000-36500000~~chr21:36575000-36600000, chr21:36475000-36500000~~chr21:36725000-36750000, chr21:36475000-36500000~~chr21:36900000-36925000, chr21:36475000-36500000~~chr21:36925000-36950000, chr21:36477778-36479875~~chr21:36490518-36492345,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE44267, 4DNFI8649RQJ, GSE52457, 4DNFIPAF4PYT, ENCSR662QKG, ENCSR732QOH, 4DNFI9ZWZ5BS, GSE48592, 4DNFI6CWNUFL, Direct, 4DNFIALNLR78, GSE118716, GSE105028, ENCSR499RVD, 4DNFIDBIEXI7, GSE108787, GSE101921, GSE58752, 4DNFIW8TIFI5, GSE80820
  • Cohesin-loop subunit: SMC1,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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