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Basic information

CohesinDB ID: CDBG00055396

Gene Symbol: AF127577.6

Ensembl ID: ENSG00000279390

Gene locus: chr21:15050188-15052379 Strand: +

Gene type: TEC

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2451 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.427
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: iPSC,GM12878,RT-112,Hep-G2,Naive-hESC,MB157,H1-hESC,A-549,CC-2551,HCC1599,HFF-hTERT,HFFc6,Keratinocytes192627,HeLa-S3,Motor-Neuron,H9-hESC,Olfactory,HUVEC

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, ENCSR194SRI, GSE94872, 4DNFIMROE6N4, ENCSR499RVD, 4DNFI5SUHCGZ, GSE120294, 4DNFIPV5KFMK, 4DNFIZ4F74QR, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFIREVU1Z5, 4DNFI9VXTBE2, GSE69643, 4DNFIRKGMZRQ, GSE155380, 4DNFICSTCJQZ, 4DNFIL9M97T2, 4DNFICEGAHRC, GSE80820, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, Direct, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFI1UEG1HD, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, ENCSR393LOP, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIFLJLIS5, GSE105028, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: Rad21,Other,SMC1

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000279390