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Basic information

CohesinDB ID: CDBG00055492

Gene Symbol: CR392039.3

Ensembl ID: ENSG00000279501

Gene locus: chr21:8996495-9018670 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0873 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H1-Mesendoderm,Olfactory,SARS-Cov2-olfactory,GM12878,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,H1-hESC,U-937,CyT49-hESC,HL-60,RT-112,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFIQYQWPF5, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFII6AN691, 4DNFIKYXMF1E, GSE131580, 4DNFIBXWIH8J, 4DNFIJWBWE41, GSE155380, ENCSR123UVP, 4DNFIIMZB6Y9, GSE52457, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIXWCLD4M, GSE165038, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFI5LCW273, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, GSE105028, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000279501