Deatailed information for gene ENSG00000279534
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055517
- Gene Symbol: AP001340.1
- Ensembl ID: ENSG00000279534
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Gene locus: chr21:25371826-25372043
Strand: +
- Gene type: TEC
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1309
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,Olfactory,GM12878,HFFc6,H9-hESC,iPSC,REC-1,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,CyT49-hESC,RT-112,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1
- Related loop:
chr21:18275000-18300000~~chr21:25375000-25400000,
chr21:21000000-21025000~~chr21:25375000-25400000,
chr21:21150000-21175000~~chr21:25375000-25400000,
chr21:21175000-21200000~~chr21:25350000-25375000,
chr21:21700000-21725000~~chr21:25350000-25375000,
chr21:22350000-22375000~~chr21:25375000-25400000,
chr21:23125000-23150000~~chr21:25375000-25400000,
chr21:24550000-24575000~~chr21:25375000-25400000,
chr21:24875000-24900000~~chr21:25350000-25375000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24900000-24925000~~chr21:25375000-25400000,
chr21:25025000-25050000~~chr21:25350000-25375000,
chr21:25025000-25050000~~chr21:25375000-25400000,
chr21:25050000-25075000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25275000-25300000~~chr21:25375000-25400000,
chr21:25350000-25375000~~chr21:26150000-26175000,
chr21:25350000-25375000~~chr21:28425000-28450000,
chr21:25350000-25375000~~chr21:28625000-28650000,
chr21:25350000-25375000~~chr21:28975000-29000000,
chr21:25375000-25400000~~chr21:25725000-25750000,
chr21:25375000-25400000~~chr21:26825000-26850000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR194SRI, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI3A3VYWU, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, GSE116872, 4DNFIEJEFCAM, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .