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Basic information

CohesinDB ID: CDBG00055517

Gene Symbol: AP001340.1

Ensembl ID: ENSG00000279534

Gene locus: chr21:25371826-25372043 Strand: +

Gene type: TEC

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1309 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,Olfactory,GM12878,HFFc6,H9-hESC,iPSC,REC-1,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,CyT49-hESC,RT-112,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR194SRI, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, 4DNFIL9M97T2, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI3A3VYWU, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, GSE116872, 4DNFIEJEFCAM, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

Tools:

Assay

refGene

Ruler

AP001340.1 gene locus

AP001340.1 related cohesin sites

AP001340.1 related cohesin loop

Deatailed information for gene ENSG00000279534

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