Browse_each

Basic information

CohesinDB ID: CDBG00055546

Gene Symbol: LINC01666

Ensembl ID: ENSG00000279579

Gene locus: chr21:8759076-8761335 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1261 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.979
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,Hep-G2,IMR-90,K-562,KBM-7,H1-hESC,CyT49-Gut,HFF-hTERT,HAP1,CyT49-pancreatic,HFFc6,Keratinocytes192627,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFIQYQWPF5, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFI5SUHCGZ, 4DNFISNGDB53, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIV239W4L, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIX7H3CE2, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIYDBBSE3, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIOCW5AEM, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000279579