Deatailed information for gene ENSG00000279615
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055577
- Gene Symbol: CR381572.2
- Ensembl ID: ENSG00000279615
- Gene locus: chr21:8680537-8680934 Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0081
FDR = 0.3052
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information) - Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60 -
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90 - Whether has cohesin-loop: True
- Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,IMR-90,KBM-7,H1-hESC,CyT49-pancreatic,HFFc6,H9-hESC,CyT49-hESC
- Related loop: chr21:7925000-7950000~~chr21:8675000-8700000, chr21:7950000-7975000~~chr21:8675000-8700000, chr21:8675000-8700000~~chr21:10325000-10350000, chr21:8675000-8700000~~chr21:10350000-10375000, chr21:8675000-8700000~~chr21:10425000-10450000, chr21:8675000-8700000~~chr21:10450000-10475000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
Tools:
- Assay
