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Basic information

CohesinDB ID: CDBG00055619

Gene Symbol: AC079801.1

Ensembl ID: ENSG00000279669

Gene locus: chr21:5232667-5243833 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0616 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Keratinocytes192627,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,Hep-G2,H1-hESC,CyT49-hESC,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIH2A7IKF, 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFIE8E4ANZ, GSE118716, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, 4DNFISNGDB53, ENCSR545YBD, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, 4DNFIV239W4L, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFIJBJ6QVH, 4DNFI9YAVTI1, 4DNFI3A3VYWU, ENCSR637QCS, 4DNFIM2BMJ33, Direct, 4DNFIXWCLD4M, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIYDBBSE3, 4DNFIEJEFCAM, 4DNFIZF1KI43, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIP71EWXC, 4DNFIQ2687RT, 4DNFIH7TH4MF, 4DNFIS5F6EBL, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365, 4DNFIVSCH2CH

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000279669