Deatailed information for gene ENSG00000279687

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00055636
  • Gene Symbol: FP565260.5
  • Ensembl ID: ENSG00000279687
  • Gene locus: chr21:5073457-5087867 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0859 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.926
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: iPSC,SARS-Cov2-olfactory,GM12878,HCT-116,IMR-90,K-562,H1-hESC,HAP1,HFFc6,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC
  • Related loop: chr21:5050000-5075000~~chr21:44175000-44200000, chr21:5050000-5075000~~chr21:44200000-44225000, chr21:5050000-5075000~~chr21:44250000-44275000, chr21:5050000-5075000~~chr21:44275000-44300000, chr21:5075000-5100000~~chr21:44150000-44175000, chr21:5075000-5100000~~chr21:44175000-44200000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFITUOMFUQ, 4DNFI5SUHCGZ, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIJWBWE41, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, Direct, 4DNFI1UEG1HD, 4DNFIQRTP7NM, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene