Deatailed information for gene ENSG00000279718

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  • Basic information
  • CohesinDB ID: CDBG00055666
  • Gene Symbol: SNX18P12
  • Ensembl ID: ENSG00000279718
  • Gene locus: chr21:9364466-9365225 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1749 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.886
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HL-60,HCT-116,RT-112,HAP1,H9-hESC,H1-Mesendoderm
  • Related loop: chr21:6350000-6375000~~chr21:9350000-9375000, chr21:6375000-6400000~~chr21:9350000-9375000, chr21:8775000-8800000~~chr21:9350000-9375000, chr21:8850000-8875000~~chr21:9350000-9375000, chr21:9100000-9125000~~chr21:9350000-9375000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: GSE52457, GSE95015, Direct, GSE131580, GSE105028, 4DNFILIM6FDL, GSE155380
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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