Deatailed information for gene ENSG00000279769
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055708
- Gene Symbol: CU639417.2
- Ensembl ID: ENSG00000279769
-
Gene locus: chr21:6034689-6036093
Strand: +
- Gene type: TEC
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0022
FDR = 0.7897
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,HCT-116,GM12878,Hep-G2,IMR-90,H1-hESC,CC-2551,HFFc6,HeLa-S3,H9-hESC
- Related loop:
chr21:6025000-6050000~~chr21:43200000-43225000,
chr21:6025000-6050000~~chr21:43275000-43300000,
chr21:6025000-6050000~~chr21:43475000-43500000,
chr21:6025000-6050000~~chr21:43575000-43600000,
chr21:6025000-6050000~~chr21:43600000-43625000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIMEG1QIC, Direct, GSE118716, 4DNFIH7TH4MF, 4DNFIP71EWXC, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, 4DNFICSTCJQZ, 4DNFIEJEFCAM, 4DNFICEGAHRC, 4DNFIIMZB6Y9
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .