Deatailed information for gene ENSG00000280081
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055947
- Gene Symbol: LINC01667
- Ensembl ID: ENSG00000280081
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Gene locus: chr21:9781909-9816833
Strand: -
- Gene type: transcribed_processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1028
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,GM12878,CyT49-endoderm,HCT-116,Hep-G2,KBM-7,H1-hESC,CyT49-Gut,HFF-hTERT,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC
- Related loop:
chr21:5225000-5250000~~chr21:9775000-9800000,
chr21:5350000-5375000~~chr21:9775000-9800000,
chr21:7950000-7975000~~chr21:9775000-9800000,
chr21:7950000-7975000~~chr21:9800000-9825000,
chr21:9000000-9025000~~chr21:9775000-9800000,
chr21:9775000-9800000~~chr21:10325000-10350000,
chr21:9775000-9800000~~chr21:10575000-10600000,
chr21:9775000-9800000~~chr21:10600000-10625000,
chr21:9775000-9800000~~chr21:10625000-10650000,
chr21:9775000-9800000~~chr21:10800000-10825000,
chr21:9775000-9800000~~chr21:9875000-9900000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, GSE118716, 4DNFIBN9K4V9, 4DNFIW8TIFI5, 4DNFIKYXMF1E, 4DNFIBXWIH8J, 4DNFICSTCJQZ, ENCSR123UVP, Direct, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIZF1KI43, 4DNFI9815EEJ, 4DNFIVJ3IIQL, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIQ2687RT, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .