Deatailed information for gene ENSG00000280108

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  • Basic information
  • CohesinDB ID: CDBG00055970
  • Gene Symbol: AJ239318.1
  • Ensembl ID: ENSG00000280108
  • Gene locus: chr21:13305151-13314944 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0664 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,CyT49-endoderm,HCT-116,Hep-G2,K-562,KBM-7,H1-hESC,CyT49-Gut,HAP1,CyT49-pancreatic,HFFc6,Keratinocytes192627,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC
  • Related loop: chr21:13300000-13325000~~chr21:13800000-13825000, chr21:13300000-13325000~~chr21:28000000-28025000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFIQYQWPF5, 4DNFIMROE6N4, 4DNFI5SUHCGZ, 4DNFIEYQ5ZIR, 4DNFIF2D3TL9, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIL9M97T2, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFIJBJ6QVH, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFII84FBKM, 4DNFIT96Z365
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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