Deatailed information for gene ENSG00000280109
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00055971
- Gene Symbol: PLAC4
- Ensembl ID: ENSG00000280109
-
Gene locus: chr21:41176321-41186773
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1997
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.492
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,RT-112,K-562,Left-Ventricle,H1-hESC,A-549,CC-2551,HFF-hTERT,HFFc6,HeLa-S3,H9-hESC,H1-Mesenchymal
- Related loop:
chr21:40875000-40900000~~chr21:41175000-41200000,
chr21:41075000-41100000~~chr21:41175000-41200000,
chr21:41150000-41175000~~chr21:41350000-41375000,
chr21:41150000-41175000~~chr21:41425000-41450000,
chr21:41150000-41175000~~chr21:41450000-41475000,
chr21:41150000-41175000~~chr21:41775000-41800000,
chr21:41169934-41171396~~chr21:41373764-41374984,
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41175000-41200000~~chr21:41425000-41450000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41775000-41800000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, GSE43070, 4DNFIMROE6N4, GSE118716, GSE108787, 4DNFIB7QTIMH, 4DNFI5SUHCGZ, GSE120294, 4DNFI7H4II2V, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFII6AN691, GSE155380, 4DNFIV239W4L, GSE52457, Direct, ENCSR244BBG, 4DNFIZF1KI43, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR338WUS, 4DNFIFI6NIKJ, GSE105028, GSE58752, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .