Deatailed information for gene ENSG00000281903
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00056457
- Gene Symbol: LINC02246
- Ensembl ID: ENSG00000281903
-
Gene locus: chr21:14824326-14918552
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.4925
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.313
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,DU145,Right-Ventricle,Aorta,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,Liver,ARPE-19,HCT-116,Germinal-Center-B,REC-1,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,BMEC,SU-DHL-4,CyT49-hESC,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Left-Ventricle,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT
- Related loop:
chr21:14250000-14275000~~chr21:14850000-14875000,
chr21:14258819-14260853~~chr21:14861975-14863460,
chr21:14258824-14260829~~chr21:14862240-14865713,
chr21:14259193-14260604~~chr21:14862345-14863646,
chr21:14275000-14300000~~chr21:14850000-14875000,
chr21:14375000-14400000~~chr21:14825000-14850000,
chr21:14375000-14400000~~chr21:14850000-14875000,
chr21:14400000-14425000~~chr21:14825000-14850000,
chr21:14400000-14425000~~chr21:14850000-14875000,
chr21:14402952-14404908~~chr21:14862143-14865717,
chr21:14402973-14404590~~chr21:14862220-14865605,
chr21:14403147-14404634~~chr21:14862345-14863683,
chr21:14403161-14404630~~chr21:14862380-14863635,
chr21:14403225-14404622~~chr21:14862401-14863579,
chr21:14425000-14450000~~chr21:14850000-14875000,
chr21:14475000-14500000~~chr21:14825000-14850000,
chr21:14500000-14525000~~chr21:14825000-14850000,
chr21:14650000-14675000~~chr21:14850000-14875000,
chr21:14725000-14750000~~chr21:14850000-14875000,
chr21:14750000-14775000~~chr21:14850000-14875000,
chr21:14825000-14850000~~chr21:15475000-15500000,
chr21:14825000-14850000~~chr21:15500000-15525000,
chr21:14825000-14850000~~chr21:15575000-15600000,
chr21:14825021-14827663~~chr21:15552007-15554258,
chr21:14850000-14875000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14975000-15000000,
chr21:14850000-14875000~~chr21:15025000-15050000,
chr21:14850000-14875000~~chr21:15050000-15075000,
chr21:14850000-14875000~~chr21:15125000-15150000,
chr21:14850000-14875000~~chr21:15150000-15175000,
chr21:14850000-14875000~~chr21:15200000-15225000,
chr21:14850000-14875000~~chr21:15225000-15250000,
chr21:14850000-14875000~~chr21:15275000-15300000,
chr21:14850000-14875000~~chr21:15325000-15350000,
chr21:14850000-14875000~~chr21:15450000-15475000,
chr21:14850000-14875000~~chr21:15475000-15500000,
chr21:14850000-14875000~~chr21:15525000-15550000,
chr21:14850000-14875000~~chr21:15550000-15575000,
chr21:14850000-14875000~~chr21:15575000-15600000,
chr21:14861967-14865695~~chr21:15482166-15484539,
chr21:14862143-14865717~~chr21:15482133-15484467,
chr21:14862143-14865717~~chr21:15591261-15593479,
chr21:14862176-14863748~~chr21:15591419-15593481,
chr21:14862210-14865573~~chr21:15482197-15484441,
chr21:14862220-14865605~~chr21:15064456-15067091,
chr21:14862220-14865605~~chr21:15482170-15484279,
chr21:14862220-14865605~~chr21:15552361-15554051,
chr21:14862220-14865605~~chr21:15591129-15593459,
chr21:14862238-14865539~~chr21:15482380-15484257,
chr21:14862238-14865539~~chr21:15552463-15554046,
chr21:14862238-14865539~~chr21:15591782-15593428,
chr21:14862240-14865713~~chr21:15062575-15066369,
chr21:14862240-14865713~~chr21:15482132-15484427,
chr21:14862240-14865713~~chr21:15591212-15593889,
chr21:14862269-14865635~~chr21:15064553-15067078,
chr21:14862269-14865635~~chr21:15482421-15484340,
chr21:14862269-14865635~~chr21:15591267-15593870,
chr21:14862372-14863683~~chr21:15591578-15593280,
chr21:14862419-14865705~~chr21:15482148-15484288,
chr21:14862419-14865705~~chr21:15591086-15593455,
chr21:14862528-14865734~~chr21:15064383-15066714,
chr21:14862528-14865734~~chr21:15482191-15484318,
chr21:14862528-14865734~~chr21:15552331-15554281,
chr21:14862528-14865734~~chr21:15591183-15593405,
chr21:14863055-14865668~~chr21:15482183-15484335,
chr21:14863074-14865706~~chr21:15062524-15066377,
chr21:14863074-14865706~~chr21:15482195-15484456,
chr21:14863114-14865715~~chr21:15062247-15066667,
chr21:14863114-14865715~~chr21:15482157-15484375,
chr21:14863114-14865715~~chr21:15552062-15554218,
chr21:14863114-14865715~~chr21:15591163-15593391,
chr21:14863116-14865733~~chr21:15482135-15484281,
chr21:14863116-14865733~~chr21:15552373-15554226,
chr21:14863228-14865622~~chr21:15482347-15484316,
chr21:14863229-14865687~~chr21:15063337-15066739,
chr21:14863229-14865687~~chr21:15482235-15484363,
chr21:14863241-14865633~~chr21:15482458-15484489,
chr21:14863241-14865633~~chr21:15552224-15554246,
chr21:14863241-14865633~~chr21:15591141-15593460,
chr21:14863253-14865690~~chr21:15482189-15484221,
chr21:14863263-14865567~~chr21:15482215-15484239,
chr21:14863273-14865535~~chr21:15482471-15484384,
chr21:14863273-14865535~~chr21:15552378-15554003,
chr21:14863283-14865722~~chr21:15482133-15484587,
chr21:14863283-14865722~~chr21:15552468-15554237,
chr21:14863287-14865668~~chr21:14952411-14953711,
chr21:14863287-14865668~~chr21:15443780-15445407,
chr21:14863287-14865668~~chr21:15482105-15484266,
chr21:14863404-14865534~~chr21:15482262-15484309,
chr21:14863404-14865534~~chr21:15552479-15554016,
chr21:14863414-14865555~~chr21:15482555-15484204,
chr21:14863422-14865658~~chr21:15552315-15554002,
chr21:14863478-14865661~~chr21:15482232-15484229,
chr21:14863486-14865529~~chr21:15482164-15484373,
chr21:14863486-14865529~~chr21:15591222-15593460,
chr21:14863640-14865671~~chr21:15482440-15484262,
chr21:14863640-14865671~~chr21:15552429-15553990,
chr21:14863650-14865555~~chr21:15482230-15484353,
chr21:14863680-14865700~~chr21:15482181-15484302,
chr21:14863680-14865700~~chr21:15591175-15593440,
chr21:14863712-14865721~~chr21:15482152-15484193,
chr21:14863712-14865721~~chr21:15591595-15593320,
chr21:14863722-14865708~~chr21:15482271-15484266,
chr21:14863722-14865708~~chr21:15591576-15594001,
chr21:14863725-14865599~~chr21:15591106-15593194,
chr21:14863752-14865528~~chr21:15482560-15484272,
chr21:14863752-14865528~~chr21:15591684-15593492,
chr21:14863778-14865733~~chr21:15482449-15484099,
chr21:14863808-14865714~~chr21:15482633-15484097,
chr21:14863815-14865681~~chr21:15482511-15484173,
chr21:14863821-14865733~~chr21:15482242-15484275,
chr21:14863829-14865645~~chr21:15482490-15484228,
chr21:14863846-14865733~~chr21:15482490-15484100,
chr21:14866302-14867752~~chr21:15062794-15066469,
chr21:14866344-14867733~~chr21:14910483-14912671,
chr21:14866344-14867733~~chr21:15291005-15294045,
chr21:14869521-14871517~~chr21:15482133-15484467,
chr21:14870376-14871550~~chr21:15552286-15554234,
chr21:14875000-14900000~~chr21:14975000-15000000,
chr21:14875000-14900000~~chr21:15000000-15025000,
chr21:14875000-14900000~~chr21:15025000-15050000,
chr21:14875000-14900000~~chr21:15050000-15075000,
chr21:14875000-14900000~~chr21:15150000-15175000,
chr21:14875000-14900000~~chr21:15200000-15225000,
chr21:14875000-14900000~~chr21:15225000-15250000,
chr21:14875000-14900000~~chr21:15275000-15300000,
chr21:14875000-14900000~~chr21:15450000-15475000,
chr21:14875000-14900000~~chr21:15475000-15500000,
chr21:14875000-14900000~~chr21:15725000-15750000,
chr21:14875000-14900000~~chr21:16775000-16800000,
chr21:14875000-14900000~~chr21:27500000-27525000,
chr21:14878983-14881740~~chr21:15064456-15067091,
chr21:14879007-14881674~~chr21:15482133-15484467,
chr21:14879137-14881530~~chr21:15482271-15484266,
chr21:14879992-14881783~~chr21:15482458-15484489,
chr21:14880014-14881756~~chr21:15495747-15497089,
chr21:14880214-14881556~~chr21:15482152-15484193,
chr21:14880231-14881467~~chr21:15482449-15484099,
chr21:14880282-14881480~~chr21:15482693-15484022,
chr21:14880552-14881691~~chr21:15164198-15165741,
chr21:14900000-14925000~~chr21:15050000-15075000,
chr21:14916149-14919331~~chr21:15482132-15484427,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, GSE116872, 4DNFIAWVDQ8C, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIM2BMJ33, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE58752, ENCSR507AHE, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR128RPG, 4DNFI1UEG1HD, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .